OpenFluor FAQs
Q. How do I import a PARAFAC model into OpenFluor?
A. OpenFluor can automatically import text files if they are provided in the right format. The mfile openfluor.m from the drEEM toolbox can be used to convert a model to OpenFluor format. For further information, see the instructions here.
Q. Why does it take several days to update OpenFluor after I submit my data?
A. Time is needed for the new data to be screened before they are incorporated into the database.
Q. What screening processes are applied to datasets in OpenFluor?
A. It is checked that the dataset has been published and the model matches the description in the original publication. It is also confirmed that the person submitting the model is listed as an author of the publication. If not, permission to submit the model must be obtained from one of its authors. Currently, there is no screening performed on the basis of model quality or reliability, although this is being considered for possible future development.
Q. How can I see and download spectral data from OpenFluor?
A. First run a search query on one or more sets of excitation and emission spectra (these can be real spectra, or PARAFAC spectra). These should be contained in a text file similar to the example shown on the demo page. You can download any spectra in the database that are matched by the search query. In the tab called "Matching Results", click on the button called "CSV" to download the results of the query . You must be logged in to download spectra. The spectra that are downloaded are the same as those plotted in the "Graphs" tab, i.e. they are normalized and interpolated to match the wavelengths of the spectra used in the search query.
Q. I have not yet published my PARAFAC model and want to keep it private. Can I still use OpenFluor?
A. Any spectra you use to run a search query in OpenFluor are private. They are not saved by OpenFluor. To submit a model you have to use the "submit a new dataset" query and check a box agreeing to the terms and conditions.
Q. I need help!
A. Contact us by email: admin (at symbol) openfluor.org
drEEM FAQs
Q. I am getting errors when using the drEEM toolbox. Where can I get help?
A. Solutions to common problems are described on the drEEM wiki
If the wiki does not help, contact us by email: dreem (at symbol) openfluor.org
A. Solutions to common problems are described on the drEEM wiki
If the wiki does not help, contact us by email: dreem (at symbol) openfluor.org